STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG91183.1Efflux protein. (462 aa)    
Predicted Functional Partners:
APG91182.1
Periplasmic binding protein; Region:COG4594P.
 
     0.806
APG91184.1
Fe(3+)-citrate import system permease protein YfmD; Region:COG0609P; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
    0.779
APG90976.1
Phytoene synthase; Region:COG1562I.
   
 
 0.745
gap
Glyceraldehyde-3-phosphate dehydrogenase; Region:COG0057G; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.661
rpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.615
APG91185.1
ABC transporter permease protein YvrB; Region:COG0609P; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.511
macB
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.486
fhuC
Iron(3+)-hydroxamate import ATP-binding protein FhuC; Region:COG1120PH.
  
  
 0.471
gcvA-3
Glycine cleavage system transcriptional activator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
    0.445
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
Server load: medium (68%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.