STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacDD-alanyl-D-alanine carboxypeptidase; Region:COG1686M; Belongs to the peptidase S11 family. (382 aa)    
Predicted Functional Partners:
dacC
D-alanyl-D-alanine carboxypeptidase; Region:COG1686M; Belongs to the peptidase S11 family.
  
  
 
0.925
mrcA
Penicillin binding peptidoglycan synthetase protein; Region:COG5009M.
     
 0.911
pbpG
Penicillin-binding protein 2D; Region:COG0744M.
   
 
 0.906
pbpG-2
Penicillin-binding protein 2D.
   
 
 0.906
pbpF
Penicillin-binding protein 1F; Region:COG0744M.
   
 
 0.906
APG91280.1
DNA polymerase III subunit delta; Region:COG0470L.
       0.650
tmk
Thymidylate kinase Tmk; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.650
rlpA
RlpA-like lipoprotein RlpA; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
  
 0.596
secB
Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
     0.536
APG92503.1
Peptidoglycan-binding protein; Region:COG2951M.
 
  
 0.480
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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