STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
dacDD-alanyl-D-alanine carboxypeptidase; Region:COG1686M; Belongs to the peptidase S11 family. (382 aa)    
Predicted Functional Partners:
penA
Penicillin-binding protein 2; Region:COG0768DM.
 
 
 0.938
dacC
D-alanyl-D-alanine carboxypeptidase; Region:COG1686M; Belongs to the peptidase S11 family.
  
  
 
0.925
mrcA
Penicillin binding peptidoglycan synthetase protein; Region:COG5009M.
     
 0.911
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase MtgA; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
   
 
 0.910
pbpG
Penicillin-binding protein 2D; Region:COG0744M.
   
 
 0.905
pbpG-2
Penicillin-binding protein 2D.
   
 
 0.905
pbpF
Penicillin-binding protein 1F; Region:COG0744M.
   
 
 0.905
APG91280.1
DNA polymerase III subunit delta; Region:COG0470L.
       0.720
tmk
Thymidylate kinase Tmk; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.720
rlpA
RlpA-like lipoprotein RlpA; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
  
 0.613
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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