STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG91327.1Dehydrogenase/oxidoreductase; Region:COG0665E. (448 aa)    
Predicted Functional Partners:
soxA
Sarcosine oxidase subunit alpha; Region:COG0404E.
  
 
 0.934
dapA-3
Dihydrodipicolinate synthase DapA; Region:COG0329EM; Belongs to the DapA family.
 
     0.822
APG91329.1
Transcriptional regulator, GntR family; Region:COG1802K.
 
    0.791
dapA-4
Dihydrodipicolinate synthase DapA; Region:COG0329EM; Belongs to the DapA family.
 
     0.688
mttB
Trimethylamine methyltransferase MttB; Region:COG5598H; Belongs to the trimethylamine methyltransferase family.
  
     0.565
APG89935.1
Transcriptional regulator, LysR family.
  
     0.546
puuA
Gamma-glutamylputrescine synthetase PuuA; Region:COG0174E; Belongs to the glutamine synthetase family.
 
  
 0.478
APG90072.1
Transcriptional regulator TetR family protein; Region:COG1309K.
  
     0.475
soxD
Sarcosine oxidase subunit delta; Region:COG4311E.
  
 
 0.451
APG89941.1
Muconate lactonizing enzyme; Region:COG4948MR.
  
     0.445
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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