Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APG91349.1Toulene ABC transporter permease; Region:COG0767M. (390 aa)    
Predicted Functional Partners:
APG91348.1
ABC transporter ATP-binding protein; Region:COG1127M.
 
 0.999
APG91347.1
ABC transporter substrate-binding protein; Region:COG1463M.
 
 0.998
APG89967.1
Hypothetical protein.
  
 
 0.862
APG91346.1
ABC transporter protein; Region:COG3218R.
 
  
 0.823
omp
Group 1 outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.643
APG89724.1
ABC transporter ATP-binding protein; Region:COG1137M.
 
  
  0.631
APG90528.1
YjgP/YjgQ family permease; Region:COG0795MN.
  
 
 0.606
APG90529.1
Permease; Region:COG0795MN.
  
 
 0.594
APG91350.1
L-Ala-D/L-Glu epimerase YcjG; Region:COG4948MR.
       0.560
APG91974.1
Proline/glycine betaine ABC transporter, substrate-binding protein; Region:COG2113E.
  
  
 0.526
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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