STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG91403.1LacI family transcriptional regulator; Region:COG1609K. (333 aa)    
Predicted Functional Partners:
gltB-2
Ferredoxin-dependent glutamate synthase 1; Region:COG0067E.
    
 
 0.868
rbsB
Ribose transport system substrate-binding protein; Region:COG1879G.
 
  
 0.722
APG89383.1
Phosphotransferase system, phosphocarrier HPr protein; Region:COG1925TG.
 
 
 
 0.713
rbsC-4
Ribose transport system permease RbsC; Region:COG1172G; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.565
rbsA-4
Ribose import ATP-binding protein RbsA; Region:COG1129G.
 
  
 0.554
ribB
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
   0.453
APG92587.1
LacI family transcriptional regulator; Region:COG1879G.
 
  
 0.423
rbsK
Ribokinase RbsK; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.414
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
   0.412
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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