STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynBBeta-xylosidase XynB; Region:COG3507G; Belongs to the glycosyl hydrolase 43 family. (541 aa)    
Predicted Functional Partners:
abfA
alpha-N-arabinofuranosidase AbfA; Region:COG3534G.
 
  
 0.782
xylA
Xylose isomerase XylA; Region:COG2115G; Belongs to the xylose isomerase family.
 
  
 0.662
APG91440.1
Beta-mannosidase; Region:COG3250G.
 
   
 0.651
dctM
TRAP dicarboxylate transporter subunit DctM; Region:COG4664Q.
       0.526
dctQ
Tripartite ATP-independent periplasmictransporter, DctQ component; Region:COG4665Q.
       0.526
APG90576.1
Transcriptional regulator; Region:COG4189K.
 
     0.522
APG91178.1
Hypothetical protein; Region:COG4289S.
 
     0.516
APG91431.1
Hypothetical protein; Region:COG5455P.
       0.509
APG91437.1
Oxidoreductase protein; Region:COG0667R.
 
     0.422
APG91438.1
Oxidoreductase protein; Region:COG0673R.
 
     0.413
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.