STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctMTRAP dicarboxylate transporter subunit DctM; Region:COG4664Q. (482 aa)    
Predicted Functional Partners:
dctQ
Tripartite ATP-independent periplasmictransporter, DctQ component; Region:COG4665Q.
 
 
 0.995
dctP
TRAP dicarboxylate transporter-DctP subunit DctP; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.907
APG91604.1
Transporter dctQ-like transmembrane protein; Region:COG4665Q.
  
 0.805
APG91605.1
TRAP dicarboxylate transporter-DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.800
APG91436.1
Hypothetical protein.
       0.548
xynB
Beta-xylosidase XynB; Region:COG3507G; Belongs to the glycosyl hydrolase 43 family.
       0.526
APG92458.1
Hypothetical protein; Region:COG3181C.
  
    0.418
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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