STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potA-2Spermidine/putrescine import ATP-binding protein PotA; Region:COG3839G. (350 aa)    
Predicted Functional Partners:
potA
Spermidine/putrescine import ATP-binding protein PotA; Region:COG3842E; Belongs to the ABC transporter superfamily.
 
 
 
0.922
APG91614.1
ABC transporter substrate-binding protein; Region:COG1840P.
 
 
  0.869
APG90053.1
ABC transporter permease; Region:COG1178P.
 
  
 0.847
futA
Iron uptake protein A1; Region:COG1840P.
 
 
  0.832
dppD
Dipeptide transport ATP-binding protein DppD; Region:COG4172Q.
 
     
0.747
oppD
Oligopeptide transport ATP-binding protein OppD; Region:COG0444EP.
 
    
0.730
araQ
L-arabinose transport system permease AraQ; Region:COG0395G.
 
 
 0.647
APG89928.1
ABC transporter permease; Region:COG1175G.
 
   0.642
APG92154.1
Sugar ABC transporter sugar-binding protein; Region:COG1653G.
  
 0.635
APG89927.1
Extracellular solute-binding protein; Region:COG1653G.
  
  0.633
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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