STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hyuEHydantoin racemase HyuE; Region:COG4126E. (249 aa)    
Predicted Functional Partners:
livM
High-affinity branched-chain amino acid transport system permease LivM; Region:COG4177E; Belongs to the binding-protein-dependent transport system permease family.
 
     0.822
APG91699.1
Branched-chain amino acid ABC transporter permease; Region:COG0559E; Belongs to the binding-protein-dependent transport system permease family.
 
     0.803
livG
Branched-chain amino acid ABC transporter ATP-binding protein; Region:COG0411E.
 
     0.800
braG
High-affinity branched-chain amino acid transporter ATP-binding protein BraG; Region:COG0410E.
  
    0.766
APG91698.1
Branched chain amino acid ABC transporter substrate-binding protein; Region:COG0683E.
 
    0.761
APG91704.1
GntR family transcriptional regulator; Region:COG1802K.
 
     0.694
allA
Ureidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.
 
     0.405
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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