STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glxA-5HTH-type transcriptional regulator GlxA; Region:COG4977K. (323 aa)    
Predicted Functional Partners:
APG90596.1
AraC family transcriptional regulator.
 
   0.729
APG90507.1
HTH-type transcriptional regulator YbfI; Region:COG2207K.
 
   0.640
APG91797.1
Hypothetical protein; Region:COG3246S.
 
     0.623
soxD
Sarcosine oxidase subunit delta; Region:COG4311E.
 
    0.552
soxA
Sarcosine oxidase subunit alpha; Region:COG0404E.
 
    0.507
APG91795.1
Cold-shock domain family protein.
       0.496
APG91309.1
Transcriptional regulator, AraC type.
 
 
 0.468
lcdH
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
   
 0.467
APG92593.1
AraC family transcriptional regulator; Region:COG2207K.
 
   0.462
soxG
Sarcosine oxidase subunit gamma; Region:COG4583E.
 
    0.438
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.