STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG91810.1ABC transporter periplasmic-binding protein YdcS; Region:COG0687E. (386 aa)    
Predicted Functional Partners:
APG91812.1
Inner membrane ABC transporter permease protein YdcU; Region:COG1176E.
 
 
 0.992
APG91813.1
Inner membrane ABC transporter permease protein YdcV; Region:COG1177E.
 
 
 0.992
APG91811.1
ABC transporter ATP-binding protein YdcT; Region:COG3842E; Belongs to the ABC transporter superfamily.
 
  
 0.893
APG91809.1
HTH-type transcriptional regulator YybE; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
 
     0.877
prr
Gamma-aminobutyraldehyde dehydrogenase Prr; Region:COG1012C; Belongs to the aldehyde dehydrogenase family.
 
    0.759
potB
ABC-type spermidine/putrescine transport system, permease component I PotB; Region:COG1176E.
 
  
 0.637
potC
PotC, ABC-type spermidine/putrescine transport system, permease component II PotC; Region:COG1177E.
 
  
 0.602
APG92140.1
ABC transporter permease; Region:COG1176E.
 
  
 0.572
potH
Putrescine transport system permease PotH; Region:COG1176E.
 
  
 0.571
APG92139.1
Binding-protein-dependent transport system inner membrane protein; Region:COG1177E.
 
  
 0.556
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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