STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG91952.1Transmembrane anti-sigma factor; Region:COG5662K. (275 aa)    
Predicted Functional Partners:
rpoE
ECF subfamily RNA polymerase sigma-24 subunit; Region:COG1595K; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.910
APG91662.1
Lipoprotein; Region:COG4315S.
 
     0.607
APG91950.1
Hypothetical protein; Region:COG5010UW.
 
     0.573
APG91663.1
ECF family sigma factor; Region:COG1595K; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.557
APG92394.1
Hypothetical protein.
  
     0.555
APG89920.1
ECF subfamily RNA polymerase sigma-24 subunit; Region:COG1595K; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.529
cya-18
Adenylate cyclase; Region:COG0457R.
  
     0.519
APG90379.1
Hypothetical protein.
 
     0.517
APG92529.1
Hypothetical protein; Region:COG4961UW.
  
     0.511
APG90472.1
Hypothetical protein; Region:COG5373S.
  
     0.504
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.