STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gguCSugar transport protein GguC; Region:COG3802S. (343 aa)    
Predicted Functional Partners:
gal
Galactose 1-dehydrogenase Gal; Region:COG0673R.
 
    0.717
APG90104.1
Fumarylacetoacetate hydrolase family protein; Region:COG3970R.
 
     0.684
ilvD-2
Dihydroxy-acid dehydratase IlvD; Region:COG0129EG; Belongs to the IlvD/Edd family.
 
     0.625
gbpR
HTH-type transcriptional regulator GbpR; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
 
     0.601
xylH
Xylose transport system permease protein XylH; Region:COG4214G; Belongs to the binding-protein-dependent transport system permease family.
     
 0.590
araG
L-arabinose transport ATP-binding protein AraG; Region:COG1129G.
     
 0.590
ald-2
Aldehyde dehydrogenase YcbD; Region:COG1012C; Belongs to the aldehyde dehydrogenase family.
       0.581
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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