STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppFOligopeptide transport ATP-binding protein YkfD; Region:COG1124EP. (251 aa)    
Predicted Functional Partners:
dppC-3
Dipeptide transport system permease DppC; Region:COG1173EP.
 
 0.999
dppB-2
Dipeptide transport system permease DppB; Region:COG0601EP.
 
 0.996
dppC-2
Dipeptide transport system permease DppC; Region:COG1173EP.
 
 0.993
ddpA
D,D-dipeptide-binding periplasmic protein DdpA; Region:COG0747E.
 
 
 0.993
oppD
Oligopeptide transport ATP-binding protein OppD; Region:COG0444EP.
 
 
0.987
gsiC
Glutathione transport system permease GsiC; Region:COG0601EP.
 
 0.979
dppA-2
Periplasmic dipeptide transport protein DppA; Region:COG0747E.
 
 
 0.947
gsiA
Glutathione import ATP-binding protein GsiA; Region:COG4172Q; Belongs to the ABC transporter superfamily.
 
 
 
0.927
dppC
Dipeptide transport system permease DppC; Region:COG1173EP.
  
 0.924
APG91041.1
Peptide ABC transporter substrate-binding protein; Region:COG4166E.
     
  0.900
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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