STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtlKMannitol 2-dehydrogenase MtlK; Region:COG0246G; Belongs to the mannitol dehydrogenase family. (494 aa)    
Predicted Functional Partners:
frk
Fructokinase Frk; Region:COG0524G.
 
  
 0.940
xylA
Xylose isomerase XylA; Region:COG2115G; Belongs to the xylose isomerase family.
    
 0.929
APG92084.1
ABC transporter permease y4oR; Region:COG0395G.
 
  
 0.918
mak
Fructokinase Mak; Region:COG1940KG.
  
 
 0.908
APG92085.1
ABC transporter permease y4oQ; Region:COG1175G.
 
    0.889
APG92080.1
Hydrolase family protein; Region:COG0637GR.
 
   
 0.846
APG92086.1
Mannitol ABC transporter substrate-binding protein; Region:COG1653G.
 
    0.846
smoS
Sorbitol dehydrogenase; Region:COG1028IQR.
  
 0.820
smoK-2
ATP-binding transport protein SmoK; Region:COG3842E; Belongs to the ABC transporter superfamily.
 
  
 0.737
lsrR
Transcriptional regulator LsrR; Region:COG2390K.
 
     0.724
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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