STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
gcvA-5Glycine cleavage system transcriptional activator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family. (336 aa)    
Predicted Functional Partners:
pecT
HTH-type transcriptional regulator PecT; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.701
aspC-3
Aspartate aminotransferase AspC; Region:COG0436E.
  
    0.659
aaeR
HTH-type transcriptional activator AaeR; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.643
APG92565.1
HTH-type transcriptional regulator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.633
APG91253.1
HTH-type transcriptional regulator YcaN; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.553
speB-2
Agmatinase SpeB; Region:COG0010E; Belongs to the arginase family.
 
     0.537
oxyR
Hydrogen peroxide-inducible activator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.517
dgdR
HTH-type transcriptional regulator DgdR; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.501
APG92142.1
ABC transporter substrate-binding protein; Region:COG0687E.
 
     0.443
APG91823.1
LysR family transcriptional regulator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.435
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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