STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG92200.1Allophanate hydrolase; Region:COG1917R. (226 aa)    
Predicted Functional Partners:
adhA-3
Alcohol dehydrogenase; Region:COG1064G.
 
     0.826
APG92201.1
Amine oxidase; Region:COG1231E.
 
     0.787
phyR
Phyllosphere-induced regulator PhyR; Region:COG0784T.
  
 
 0.557
phyR-2
Phyllosphere-induced regulator PhyR; Region:COG0784T.
  
 
 0.557
rpoN-2
RNA polymerase sigma factor; Region:COG1595K; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.545
gcvA-6
Glycine cleavage system transcriptional activator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
 
     0.518
APG89920.1
ECF subfamily RNA polymerase sigma-24 subunit; Region:COG1595K; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.515
APG91663.1
ECF family sigma factor; Region:COG1595K; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.515
rpoE
ECF subfamily RNA polymerase sigma-24 subunit; Region:COG1595K; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.515
sig
RNA polymerase sigma factor; Region:COG1595K; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.515
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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