STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG92201.1Amine oxidase; Region:COG1231E. (369 aa)    
Predicted Functional Partners:
APG90253.1
Histone deacetylase superfamily protein; Region:COG0123BQ.
  
 0.866
aphA
Acetylpolyamine aminohydrolase AphA; Region:COG0123BQ.
   
 0.843
APG91873.1
Retron-type RNA-directed DNA polymerase; Region:COG0553KL.
    
 0.834
APG92200.1
Allophanate hydrolase; Region:COG1917R.
 
     0.798
dnaN
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
  
 0.668
APG89897.1
Erythronolide synthase, modules 3 and 4; Region:COG0236IQ.
 
 
 0.648
adhA-3
Alcohol dehydrogenase; Region:COG1064G.
 
    0.615
ragB
Sensor histidine kinase; Region:COG2205T.
  
    0.551
APG90976.1
Phytoene synthase; Region:COG1562I.
   
  
 0.544
pleC
Non-motile and phage-resistance protein PleC; Region:COG0591E.
   
  
 0.491
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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