STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaE-2Pilus assembly protein CpaE. (376 aa)    
Predicted Functional Partners:
tadB-2
Pilus assembly protein TadB; Region:COG4965UW.
 
  
 0.955
tadC-2
Components of type IV pilus TadC.
 
  
 0.942
cpaC-2
CpaC pilus assembly protein; Region:COG4964UW; Belongs to the bacterial secretin family.
 
  
 0.931
cpaB-2
CpaB pilus assembly protein CpaB; Region:COG3745UW.
 
  
 0.930
APG92219.1
Hypothetical protein; Region:COG4961UW.
 
     0.917
cpaF-2
CpaF pilus assembly protein, ATPase CpaF; Region:COG4962UW.
 
  
 0.876
tadB
Type II/IV secretion system protein TadB, Flp pilus assembly protein TadB; Region:COG4965UW.
 
  
 0.871
cpaB-3
Flp pilus assembly protein CpaB; Region:COG3745UW.
 
  
 0.865
APG92217.1
Hypothetical protein.
  
    0.863
cpaB
Pilus assembly protein CpaB; Region:COG3745UW.
 
  
 0.858
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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