STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilAPilA2 pilus assembly protein; Region:COG3847UW. (53 aa)    
Predicted Functional Partners:
cpaE
Pilus assembly protein CpaE; Region:COG4963UW.
 
  
 0.860
cpaB-3
Flp pilus assembly protein CpaB; Region:COG3745UW.
 
  
 0.855
tadC-3
Components of type IV pilus TadC; Region:COG2064W.
 
  
 0.854
cpaE-3
CpaE2 pilus assembly protein; Region:COG2197TK.
 
  
 0.852
tadB-3
Pilus assembly protein TadB; Region:COG4965UW.
 
    0.850
pilQ-2
Component of type IV pilus PilQ.
 
  
 0.841
cpaA-2
Pilus assembly protein CpaA; Region:COG4960OT.
 
  
 0.836
cpaB
Pilus assembly protein CpaB; Region:COG3745UW.
 
  
 0.832
capA
Type IV prepilin peptidase CpaA; Region:COG4960OT.
 
  
 0.788
pilQ
Component of type IV pilus PilQ.
 
  
 0.770
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.