STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG92243.1Metalloendopeptidase; Region:COG0739M. (650 aa)    
Predicted Functional Partners:
mrcA
Penicillin binding peptidoglycan synthetase protein; Region:COG5009M.
 
   
 0.666
pbpG
Penicillin-binding protein 2D; Region:COG0744M.
  
   
 0.652
pbpF
Penicillin-binding protein 1F; Region:COG0744M.
  
   
 0.652
lepB
Signal peptidase I; Region:COG0681U; Belongs to the peptidase S26 family.
 
  
 0.611
APG91365.1
Hypothetical protein; Region:COG3184S.
  
     0.600
penA
Penicillin-binding protein 2; Region:COG0768DM.
 
   
 0.552
ostA
Organic solvent tolerance protein OstA; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.550
APG90443.1
Outer membrane protein y4fJ precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.548
ftsX
Cell division protein FtsX; Region:COG2177D.
 
  
 0.526
APG91332.1
Kinesin-like protein; Region:COG1196D.
  
 
   0.511
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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