Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
APG92275.1Oxidoreductase YbbO; Region:COG1028IQR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (277 aa)    
Predicted Functional Partners:
APG92276.1
Hypothetical protein.
       0.755
cobO-2
cob(I)yrinic acid a,c-diamide adenosyltransferase; Region:COG2096H; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.714
APG89897.1
Erythronolide synthase, modules 3 and 4; Region:COG0236IQ.
 
 
 0.703
APG92274.1
Ribonuclease protein; Region:COG1295S.
  
    0.623
APG92278.1
Rhomboid family serine protease; Region:COG0705O.
       0.600
cpnA
Cyclopentanol dehydrogenase; Region:COG1028IQR.
  
 
   0.498
APG91894.1
Oxidoreductase YkvO; Region:COG1028IQR.
  
 
   0.440
smoS
Sorbitol dehydrogenase; Region:COG1028IQR.
  
 
   0.417
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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