STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutFFormiminoglutamate deiminase; Region:COG0402FR. (457 aa)    
Predicted Functional Partners:
hutH
Histidine ammonia-lyase HutH; Region:COG2986E.
 
  
 0.868
APG92333.1
Hypothetical protein; Region:COG3758T.
 
    0.845
hutC
Histidine utilization repressor; Region:COG2188K.
 
  
 0.837
APG92512.1
N-formylglutamate amidohydrolase; Region:COG3741E.
 
 
 0.694
APG92329.1
ABC transporter substrate-binding protein; Region:COG2113E.
  
    0.689
dgdA
2,2-dialkylglycine decarboxylase; Region:COG0160E.
  
 
 0.553
APG91782.1
N-formylglutamate amidohydrolase; Region:COG3931E.
     
  0.500
APG92477.1
N-formylglutamate amidohydrolase protein; Region:COG3931E.
     
  0.500
proW-4
Glycine betaine/L-proline transport system permease ProW; Region:COG4176E.
  
    0.435
proV-3
Glycine betaine/L-proline ABC transporter ATP-binding protein; Region:COG4175E.
  
    0.435
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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