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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG92343.1UDP-glucose epimerase YtcB; Region:COG0451M. (346 aa)    
Predicted Functional Partners:
rkpK
UDP-glucose 6-dehydrogenase RkpK; Region:COG1004M.
 0.992
lspL
UDP-glucuronate 5'-epimerase LspL; Region:COG0451M.
  
  
 
0.909
APG92347.1
Group 1 glycosyl transferase; Region:COG0438M.
 
  
 0.831
APG92344.1
Hypothetical protein; Region:COG4641D.
    0.829
APG92342.1
3-demethylubiquinone-9 3-methyltransferase; Region:COG2227H.
 
     0.805
rfbE
CDP-paratose 2-epimerase RfbE; Region:COG0451M.
 
    
0.788
APG92345.1
Hypothetical protein; Region:COG4641D.
    0.785
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
  0.783
APG92346.1
Glycosyltransferase; Region:COG4641D.
 
    0.780
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
  
  0.772
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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