STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glxA-6HTH-type transcriptional regulator glxA; Region:COG4977K. (348 aa)    
Predicted Functional Partners:
soxD
Sarcosine oxidase subunit delta; Region:COG4311E.
 
    0.682
soxG
Sarcosine oxidase subunit gamma; Region:COG4583E.
 
    0.671
APG90507.1
HTH-type transcriptional regulator YbfI; Region:COG2207K.
 
   0.664
soxA
Sarcosine oxidase subunit alpha; Region:COG0404E.
 
    0.661
APG92371.1
4-hydroxyproline epimerase; Region:COG3938E; Belongs to the proline racemase family.
       0.593
proW-5
Glycine betaine/L-proline transport system permease protein proW; Region:COG4176E.
       0.581
proW-6
Glycine betaine/L-proline transport system permease protein ProW; Region:COG4176E.
       0.581
soxB
Sarcosine oxidase subunit beta; Region:COG0665E.
  
     0.580
proV-4
Glycine betaine/proline ABC transporter (ATP-binding protein); Region:COG4175E.
  
    0.566
proX
Glycine betaine-binding periplasmic protein Flags: Precursor; Region:COG2113E.
 
     0.483
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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