STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG92371.14-hydroxyproline epimerase; Region:COG3938E; Belongs to the proline racemase family. (332 aa)    
Predicted Functional Partners:
proC-2
Pyrroline-5-carboxylate reductase ProC; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.905
dapA-2
Dihydrodipicolinate synthase DapA; Region:COG0329EM; Belongs to the DapA family.
 
  
 0.764
proW-5
Glycine betaine/L-proline transport system permease protein proW; Region:COG4176E.
       0.764
proW-6
Glycine betaine/L-proline transport system permease protein ProW; Region:COG4176E.
       0.764
proV-4
Glycine betaine/proline ABC transporter (ATP-binding protein); Region:COG4175E.
       0.736
dadA-2
D-amino acid dehydrogenase small subunit DadA; Region:COG0665E.
 
   
 0.702
glxA-6
HTH-type transcriptional regulator glxA; Region:COG4977K.
       0.593
proX
Glycine betaine-binding periplasmic protein Flags: Precursor; Region:COG2113E.
       0.492
dapA-4
Dihydrodipicolinate synthase DapA; Region:COG0329EM; Belongs to the DapA family.
 
  
 0.482
APG89414.1
Ornithine cyclodeaminase/mu-crystallin family protein; Region:COG2423E.
 
   
 0.437
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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