STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG92379.1Transcriptional regulator, GntR family; Region:COG1802K. (237 aa)    
Predicted Functional Partners:
APG92376.1
Oxidoreductase; Region:COG0665E.
 
    0.887
dapA-4
Dihydrodipicolinate synthase DapA; Region:COG0329EM; Belongs to the DapA family.
 
     0.838
ald-4
Aldehyde dehydrogenase; Region:COG1012C; Belongs to the aldehyde dehydrogenase family.
 
    0.774
APG90061.1
GntR family transcriptional regulator; Region:COG1802K.
  
     0.754
proX
Glycine betaine-binding periplasmic protein Flags: Precursor; Region:COG2113E.
       0.563
pdhR
Pyruvate dehydrogenase complex repressor; Region:COG2186K.
  
  
 0.537
lutR
HTH-type transcriptional regulator LutR; Region:COG2186K.
  
  
 0.495
APG91021.1
HTH-type transcriptional regulator YieP; Region:COG2186K.
  
  
 0.473
kdgR
Transcriptional regulator KdgR; Region:COG1414K.
  
  
 0.430
APG91327.1
Dehydrogenase/oxidoreductase; Region:COG0665E.
 
    0.422
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.