Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APG92406.1Outer surface protein; Region:COG3637M. (254 aa)    
Predicted Functional Partners:
APG90392.1
Hypothetical protein; Region:COG5447S.
  
     0.672
APG89756.1
Hypothetical protein; Region:COG5568S.
  
     0.648
cpaD
Pilus assembly protein CpaD; Region:COG5461W.
  
     0.617
APG90480.1
Hypothetical protein; Region:COG5350R.
  
     0.617
APG92405.1
Heat resistant agglutinin 1 signal peptide protein; Region:COG3637M.
 
    
0.592
APG90398.1
Hypothetical protein; Region:COG5402S.
  
     0.546
APG89867.1
Hypothetical protein.
  
     0.545
APG90843.1
Hypothetical protein.
  
     0.522
APG90917.1
Hypothetical protein; Region:COG5490S.
  
     0.517
cpaA-2
Pilus assembly protein CpaA; Region:COG4960OT.
  
     0.509
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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