Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hssHomospermidine synthase Hss; Region:COG5310Q. (483 aa)    
Predicted Functional Partners:
ldc
Lysine/ornithine decarboxylase Ldc; Region:COG0019E; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
     0.675
APG92488.1
Outer membrane lipoprotein omp10.
       0.582
APG92486.1
NADH dehydrogenase.
       0.498
speB-2
Agmatinase SpeB; Region:COG0010E; Belongs to the arginase family.
      
 0.404
pyk
Pyruvate kinase Pyk; Region:COG0469G; Belongs to the pyruvate kinase family.
      
 0.404
deaD
Cold-shock DEAD box protein A; Region:COG0513L; Belongs to the DEAD box helicase family.
   
    0.403
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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