STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBXylulose kinase XylB; Region:COG1070G. (484 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase XylA; Region:COG2115G; Belongs to the xylose isomerase family.
 
 
 0.991
cbbE
Ribulose-phosphate 3-epimerase CbbE; Region:COG0036G; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.924
APG92587.1
LacI family transcriptional regulator; Region:COG1879G.
 
  
 0.857
rhaM
L-rhamnose mutarotase RhaM; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.768
APG92038.1
Hypothetical protein; Region:COG3254M.
  
  
 0.767
APG91176.1
Hypothetical protein; Region:COG1082G.
  
 
 0.562
APG91439.1
Sugar phosphate isomerase/epimerase; Region:COG1082G.
  
 
 0.562
APG92588.1
Hypothetical protein; Region:COG5555U.
       0.527
tal
Transaldolase Tal; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 
 0.517
APG92584.1
Endonuclease; Region:COG1082G.
 
  
 0.499
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.