Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xylBXylulose kinase XylB; Region:COG1070G. (484 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase XylA; Region:COG2115G; Belongs to the xylose isomerase family.
 
 
 0.994
cbbE
Ribulose-phosphate 3-epimerase CbbE; Region:COG0036G; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.930
APG92587.1
LacI family transcriptional regulator; Region:COG1879G.
 
  
 0.887
APG91439.1
Sugar phosphate isomerase/epimerase; Region:COG1082G.
  
 
 0.585
tal
Transaldolase Tal; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 
 0.565
APG91176.1
Hypothetical protein; Region:COG1082G.
  
 
 0.546
APG92588.1
Hypothetical protein; Region:COG5555U.
       0.528
APG92584.1
Endonuclease; Region:COG1082G.
 
  
 0.524
APG92084.1
ABC transporter permease y4oR; Region:COG0395G.
 
    0.478
mtlK
Mannitol 2-dehydrogenase MtlK; Region:COG0246G; Belongs to the mannitol dehydrogenase family.
 
  
 0.474
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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