STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcBArginase ArcB; Region:COG0010E; Belongs to the arginase family. (307 aa)    
Predicted Functional Partners:
rocD
Ornithine aminotransferase RocD; Region:COG4992E; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 0.988
argF
Ornithine carbamoyltransferase ArgF; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
    
 0.917
ldc
Lysine/ornithine decarboxylase Ldc; Region:COG0019E; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.915
argJ
Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
     
 0.913
ureA
Urease subunit gamma; Region:COG0831E; Belongs to the urease gamma subunit family.
    
  0.906
aspC-2
Aspartate aminotransferase AspC; Region:COG0436E.
   
 
 0.903
ureC
Urease subunit alpha; Region:COG0804E.
    
  0.903
ureB
Urease subunit beta; Region:COG0832E; Belongs to the urease beta subunit family.
    
  0.903
arcA
Arginine deiminase; Region:COG2235E.
    
 0.831
argH
Argininosuccinate lyase ArgH; Region:COG0165E.
     
 0.827
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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