STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sugBTrehalose transport system permease protein SugB; Region:COG0395G. (274 aa)    
Predicted Functional Partners:
malF
Trehalose/maltose transport system permease protein MalF; Region:COG1175G.
 0.993
APG92718.1
Glycerol-3-phosphate and glycerol ABC transporter, periplasmic solute-binding component; Region:COG1653G.
 
 0.986
ugpC-3
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Region:COG3839G; Belongs to the ABC transporter superfamily.
 
 0.976
APG92717.1
Glycerol-3-phosphate and glycerol transport protein; Region:COG5477S.
 
    0.934
amyD
Starch degradation products transport system permease protein AmyD; Region:COG1175G.
 
 0.588
APG92155.1
ABC transporter permease; Region:COG1175G.
 
 0.587
APG89928.1
ABC transporter permease; Region:COG1175G.
 
 
 0.586
APG92934.1
ABC transporter permease; Region:COG1175G.
 
 
 0.565
APG91443.1
ABC transporter permease; Region:COG1175G.
 
 
 0.562
APG92085.1
ABC transporter permease y4oQ; Region:COG1175G.
 
 0.559
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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