STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG92753.1ATPase component BioM of energizing module of biotin ECF transporter; Region:COG1485R. (384 aa)    
Predicted Functional Partners:
sdhB
Succinate dehydrogenase iron-sulfur subunit SdhB; Region:COG0479C; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
    0.813
sdhA
Succinate dehydrogenase flavoprotein subunit SdhA; Region:COG1053C; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
 
    0.810
APG90423.1
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
 
     0.592
APG92759.1
Succinate dehydrogenase membrane anchor subunit; Region:COG2009C.
 
   
 0.592
omp-2
Outer membrane lipoprotein omp19.
       0.563
mdh-3
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
     
 0.560
APG92758.1
Succinate dehydrogenase hydrophobic membrane anchor protein; Region:COG2142C.
 
     0.478
sucA
2-oxoglutarate dehydrogenase E1 componentSucA; Region:COG0567C.
 
     0.474
APG92258.1
SAM-dependent methyltransferase protein; Region:COG2226H.
  
     0.454
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
 
     0.450
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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