STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG92798.1Hypothetical protein; Region:COG2861G. (398 aa)    
Predicted Functional Partners:
APG90860.1
Hypothetical protein; Region:COG5330S.
  
     0.752
tadE
Pilus assembly protein contains TadE domain; Region:COG4961UW.
  
     0.731
tadG
Flp pilus assembly protein TadG; Region:COG4961UW.
  
     0.722
APG90843.1
Hypothetical protein.
  
     0.712
APG89550.1
Flp pilus assembly protein TadD, contains TPR repeat; Region:COG5010UW.
 
     0.708
APG92389.1
Two-component response regulator protein; Region:COG0784T.
  
     0.691
cpaA-2
Pilus assembly protein CpaA; Region:COG4960OT.
  
     0.667
rppH
RNA pyrophosphohydrolase RppH; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
       0.652
APG92453.1
Hypothetical protein; Region:COG5317S.
  
     0.631
capA
Type IV prepilin peptidase CpaA; Region:COG4960OT.
  
     0.616
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.