STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG92907.1Extracellular solute-binding protein, family 3; Region:COG0834ET; Belongs to the bacterial solute-binding protein 3 family. (257 aa)    
Predicted Functional Partners:
APG92908.1
Amino acid ABC transporter permease; Region:COG0765E.
 0.997
APG92840.1
Amino-acid permease protein YxeN; Region:COG0765E.
 
 0.977
tcyC
L-cystine import ATP-binding protein TcyC; Region:COG1126E.
 
 0.977
nocM
Nopaline transport system permease protein NocM; Region:COG4160E.
  
 0.901
occM
Octopine transport system permease protein OccM; Region:COG4160E.
  
 0.848
hisQ
Histidine transport system permease HisQ; Region:COG4215E.
 
 0.815
APG92906.1
Hypothetical protein.
       0.773
aotP
Arginine/ornithine transport ATP-binding protein AotP; Region:COG4598E.
 
  
 0.739
APG89845.1
Extracellular amino acid solute-binding protein; Region:COG0834ET.
  
     0.734
aapM
General L-amino acid transport system permease protein AapM; Region:COG0765E.
 
 0.680
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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