Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gabD-2Succinate-semialdehyde dehydrogenase [NADP+]; Region:COG1012C. (510 aa)    
Predicted Functional Partners:
aatB
Aspartate aminotransferase B; Region:COG0436E.
  
   0.765
APG92919.1
Hypothetical protein; Region:COG5383R.
 
    0.710
APG92920.1
D-lactate dehydrogenase; Region:COG0277C.
 
     0.676
APG92729.1
Dehydrogenase; Region:COG1748E.
 
  
 0.659
APG89897.1
Erythronolide synthase, modules 3 and 4; Region:COG0236IQ.
  
 
 0.592
fadB-2
3-hydroxyacyl-CoA dehydrogenase; Region:COG1024I.
  
 0.526
APG92181.1
enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase; Region:COG1024I.
  
 0.526
gcvA-7
Glycine cleavage system transcriptional activator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
 
     0.512
gltB-2
Ferredoxin-dependent glutamate synthase 1; Region:COG0067E.
  
  
 0.492
dgdA
2,2-dialkylglycine decarboxylase; Region:COG0160E.
 
 
 0.437
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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