STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG92940.1Hypothetical protein. (105 aa)    
Predicted Functional Partners:
ttuD
Hydroxypyruvate reductase TtuD; Region:COG2379G.
       0.798
APG92939.1
L-sorbose 1-dehydrogenase; Region:COG2303IR.
       0.755
APG92935.1
ABC transporter permease; Region:COG0395G.
 
     0.679
APG92937.1
Dehydrogenase; Region:COG2303IR.
 
     0.652
APG92934.1
ABC transporter permease; Region:COG1175G.
 
     0.629
APG92933.1
Sugar-binding periplasmic protein; Region:COG1653G.
 
     0.622
fabG-3
3-oxoacyl-ACP reductase; Region:COG1028IQR.
 
    0.606
ugpC-4
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Region:COG3842E; Belongs to the ABC transporter superfamily.
       0.522
APG91444.1
Sugar-binding periplasmic protein; Region:COG1653G.
  
     0.440
APG92928.1
Coenzyme A transferase; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family.
 
     0.429
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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