Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ALU98667.1 | aroC | ATE51_00244 | ATE51_00250 | Tetratricopeptide repeat protein. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.827 |
| ALU98667.1 | fhaB_1 | ATE51_00244 | ATE51_00252 | Tetratricopeptide repeat protein. | Filamentous hemagglutinin. | 0.418 |
| ALU98667.1 | fhaB_2 | ATE51_00244 | ATE51_00254 | Tetratricopeptide repeat protein. | Filamentous hemagglutinin. | 0.418 |
| ALU98667.1 | rnc | ATE51_00244 | ATE51_00248 | Tetratricopeptide repeat protein. | Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.812 |
| ALU98667.1 | rnhA | ATE51_00244 | ATE51_00246 | Tetratricopeptide repeat protein. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.812 |
| ALU98674.1 | fhaB_1 | ATE51_00258 | ATE51_00252 | Hypothetical protein. | Filamentous hemagglutinin. | 0.957 |
| ALU98674.1 | fhaB_2 | ATE51_00258 | ATE51_00254 | Hypothetical protein. | Filamentous hemagglutinin. | 0.956 |
| ALU98674.1 | fhaB_2-2 | ATE51_00258 | ATE51_00256 | Hypothetical protein. | Hypothetical protein. | 0.967 |
| ALU98674.1 | fhaB_3 | ATE51_00258 | ATE51_00260 | Hypothetical protein. | Filamentous hemagglutinin. | 0.860 |
| ALU98674.1 | rnhA | ATE51_00258 | ATE51_00246 | Hypothetical protein. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.417 |
| aroC | ALU98667.1 | ATE51_00250 | ATE51_00244 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Tetratricopeptide repeat protein. | 0.827 |
| aroC | fhaB_1 | ATE51_00250 | ATE51_00252 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Filamentous hemagglutinin. | 0.418 |
| aroC | fhaB_2 | ATE51_00250 | ATE51_00254 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Filamentous hemagglutinin. | 0.418 |
| aroC | rnc | ATE51_00250 | ATE51_00248 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.800 |
| aroC | rnhA | ATE51_00250 | ATE51_00246 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.803 |
| fhaB_1 | ALU98667.1 | ATE51_00252 | ATE51_00244 | Filamentous hemagglutinin. | Tetratricopeptide repeat protein. | 0.418 |
| fhaB_1 | ALU98674.1 | ATE51_00252 | ATE51_00258 | Filamentous hemagglutinin. | Hypothetical protein. | 0.957 |
| fhaB_1 | aroC | ATE51_00252 | ATE51_00250 | Filamentous hemagglutinin. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.418 |
| fhaB_1 | fhaB_2 | ATE51_00252 | ATE51_00254 | Filamentous hemagglutinin. | Filamentous hemagglutinin. | 0.974 |
| fhaB_1 | fhaB_2-2 | ATE51_00252 | ATE51_00256 | Filamentous hemagglutinin. | Hypothetical protein. | 0.966 |
page 1 of 3