Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dppBDipeptide transport system permease protein DppB. (314 aa)    
Predicted Functional Partners:
appA
Oligopeptide-binding protein AppA precursor.
 0.999
dppC
Dipeptide transport system permease protein DppC.
 0.999
oppD
Oligopeptide transport ATP-binding protein OppD.
 
 0.999
nikE
Nickel import ATP-binding protein NikE.
  
 0.995
pstB
Phosphate import ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
    
 0.791
hypB
Hydrogenase isoenzymes nickel incorporation protein HypB.
      
 0.771
hydA_2
Quinone-reactive Ni/Fe-hydrogenase small chain precursor.
      
 0.762
pctC
Methyl-accepting chemotaxis protein PctC.
      
 0.761
penA
Penicillin-binding protein 2.
      
 0.650
mcp4_1
Methyl-accepting chemotaxis protein 4.
      
 0.644
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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