Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALU98838.1Hypothetical protein. (73 aa)    
Predicted Functional Partners:
ALU98836.1
Cbb3-type cytochrome oxidase component FixQ.
       0.817
ccoP
Cbb3-type cytochrome c oxidase subunit CcoP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
       0.817
ccoO
Cytochrome C oxidase, mono-heme subunit/FixO.
       0.781
ccoN
Hypothetical protein; Cytochrome c oxidase subunit 1 homolog, bacteroid; Belongs to the heme-copper respiratory oxidase family.
       0.761
ALU98842.1
PD-(D/E)XK nuclease superfamily protein.
     
 0.695
ALU98840.1
Hypothetical protein.
     
 0.650
ALU98841.1
FixH.
     
 0.649
addA
ATP-dependent helicase/nuclease subunit A; Belongs to the helicase family. UvrD subfamily.
       0.628
ALU98829.1
Hypothetical protein.
       0.567
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
       0.567
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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