Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
oprFOuter membrane porin F precursor. (332 aa)    
Predicted Functional Partners:
flgE_2
Flagellar hook protein FlgE.
   
 
 0.888
gph_1
Phosphoglycolate phosphatase.
  
  
 0.836
degP
Periplasmic serine endoprotease DegP precursor; Belongs to the peptidase S1C family.
    
 
 0.761
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
   0.723
flaB2
Flagellar filament 31.3 kDa core protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
  
 0.717
cdtB
Cytolethal distending toxin subunit B precursor.
   
  
 0.657
tlyA
16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA.
      
 0.650
tolB
Translocation protein TolB.
 
 
 0.642
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
    0.621
ALU99392.1
Hypothetical protein.
    
 
 0.600
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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