Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
gph_1Phosphoglycolate phosphatase. (212 aa)    
Predicted Functional Partners:
gph_3
Phosphoglycolate phosphatase.
  
  
 
0.928
ALU99122.1
Putative FAD-linked oxidoreductase.
     
  0.900
lutA_2
Lactate utilization protein A.
     
  0.900
aldA
Lactaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.900
oprF
Outer membrane porin F precursor.
  
  
 0.836
nifJ
Pyruvate-flavodoxin oxidoreductase.
     
 0.742
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase; Belongs to the KdsB family.
     
 0.660
ymfD
Bacillibactin exporter.
      
 0.650
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
  
 0.638
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
    0.624
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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