Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
xpsDType II secretion system protein D precursor; Belongs to the bacterial secretin family. (472 aa)    
Predicted Functional Partners:
gspF
Putative type II secretion system protein F.
 
  
 0.964
epsE_1
Type II secretion system protein E.
 
  
 0.960
ALU98854.1
Hypothetical protein.
  
  
 0.830
ALU98853.1
Hypothetical protein.
  
  
 0.816
hcpA
Major exported protein.
      
 0.778
ALU98851.1
Hypothetical protein.
       0.773
nifJ
Pyruvate-flavodoxin oxidoreductase.
       0.768
intA
Prophage CP4-57 integrase; Belongs to the 'phage' integrase family.
      
 0.650
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
  
 0.615
exbB_3
Biopolymer transport protein ExbB.
  
    0.580
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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