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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsE_2Putative glycosyltransferase EpsE. (637 aa)    
Predicted Functional Partners:
epsJ_1
Putative glycosyltransferase EpsJ.
 
  
 0.882
epsJ_2
Putative glycosyltransferase EpsJ.
 
  
 0.880
rmlB
dTDP-glucose 4,6-dehydratase.
 
    0.850
epsJ_4
Putative glycosyltransferase EpsJ.
 
  
 0.826
ALU98894.1
Hypothetical protein.
      0.801
wfgD
UDP-Glc:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,3-glucosyltransferase WfgD.
  
    0.790
epsJ_5
Putative glycosyltransferase EpsJ.
  
    0.790
pglI
GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase.
  
    0.789
yjjG
Pyrimidine 5'-nucleotidase YjjG.
  
 
 0.787
legF_1
CMP-N,N'-diacetyllegionaminic acid synthase.
  
    0.781
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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