STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kynBKynurenine formamidase. (224 aa)    
Predicted Functional Partners:
rhmA
2-keto-3-deoxy-L-rhamnonate aldolase.
 
     0.909
rmlB
dTDP-glucose 4,6-dehydratase.
 
     0.902
fdnG
Formate dehydrogenase, nitrate-inducible, major subunit precursor.
     
  0.900
fdhA
Formate dehydrogenase subunit alpha precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
  0.900
fdhB1
Formate dehydrogenase iron-sulfur subunit.
     
  0.900
fdoI
Formate dehydrogenase, cytochrome b556(fdo) subunit.
     
  0.900
gph_2
Phosphoglycolate phosphatase.
 
     0.900
ALU98894.1
Hypothetical protein.
 
     0.861
serA_1
D-3-phosphoglycerate dehydrogenase.
 
     0.829
legF_1
CMP-N,N'-diacetyllegionaminic acid synthase.
 
     0.809
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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