STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjjGPyrimidine 5'-nucleotidase YjjG. (194 aa)    
Predicted Functional Partners:
prk
Phosphoribulokinase.
 
    0.891
ALU98908.1
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
 
    0.807
ALU98904.1
Hypothetical protein.
       0.800
gph_2
Phosphoglycolate phosphatase.
     
 0.789
epsE_2
Putative glycosyltransferase EpsE.
  
 
 0.787
ALU98894.1
Hypothetical protein.
  
 
 0.786
rmlB
dTDP-glucose 4,6-dehydratase.
  
  
 0.781
serA_1
D-3-phosphoglycerate dehydrogenase.
  
    0.776
legF_1
CMP-N,N'-diacetyllegionaminic acid synthase.
       0.775
kynB
Kynurenine formamidase.
       0.774
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.