STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALU98924.1Nucleoside recognition. (88 aa)    
Predicted Functional Partners:
feoB_1
Ferrous iron transport protein B.
      0.941
feoB_2
Ferrous iron transport protein B.
      0.941
nrnB
3',5'-cyclic-nucleotide phosphodiesterase.
  
     0.757
secG
Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
 
   0.722
ALU99124.1
ComEC family competence protein.
  
     0.700
ALU98842.1
PD-(D/E)XK nuclease superfamily protein.
  
     0.611
ALV00304.1
Putative permease YjgP/YjgQ family protein.
  
     0.591
ALU99153.1
Cytochrome C1 family protein.
  
     0.573
lptD
LPS-assembly protein LptD precursor; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
     0.564
tolB
Translocation protein TolB.
  
     0.558
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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