Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
besAFerri-bacillibactin esterase BesA. (292 aa)    
Predicted Functional Partners:
cirA_3
Colicin I receptor precursor.
 
  
 0.895
nifF
Flavodoxin-2; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
  
    0.855
tlyA
16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA.
      
 0.778
ALU98936.1
Hypothetical protein.
       0.773
ALU98937.1
Hypothetical protein.
       0.773
cirA_2
Colicin I receptor precursor.
 
  
 0.691
degP
Periplasmic serine endoprotease DegP precursor; Belongs to the peptidase S1C family.
      
 0.589
macB_3
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.587
macA
Macrolide export protein MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   
 0.540
katA
Catalase.
       0.503
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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