STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pseCUDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase; Belongs to the DegT/DnrJ/EryC1 family. (376 aa)    
Predicted Functional Partners:
pseB
UDP-N-acetylglucosamine 4,6-dehydratase (inverting).
 
 0.998
pseH
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase.
 
 
 0.975
pseG
UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase.
 
  
 0.855
pseI
Pseudaminic acid synthase.
 
  
 0.823
ALU99025.1
Hypothetical protein.
       0.783
legG
GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolyzing).
  
  
 0.669
rfbB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.661
pht4
Putative 4,5-dihydroxyphthalate dehydrogenase.
 
  
 0.638
dcd
Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP.
       0.637
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
 
  
 0.593
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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