STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfkJLow molecular weight protein-tyrosine-phosphatase YfkJ. (151 aa)    
Predicted Functional Partners:
trxA
Thioredoxin-1; Belongs to the thioredoxin family.
  
 
 0.673
ymfD
Bacillibactin exporter.
  
    0.564
ALU99068.1
Hypothetical protein.
       0.517
ALU98759.1
Sodium Bile acid symporter family protein.
  
  
 0.497
ybeY
Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
   0.481
ALV00363.1
FtsH protease regulator HflC.
  
    0.475
ywlE
Low molecular weight protein-tyrosine-phosphatase YwlE.
      
 0.470
ALU99536.1
Putative metallo-hydrolase.
   
   0.461
ALV00101.1
tRNA 2-selenouridine synthase.
   
   0.459
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
   0.456
Your Current Organism:
Campylobacter coli
NCBI taxonomy Id: 195
Other names: ATCC 33559, C. coli, CCUG 11283, CCUG 14540, CCUG:33450 [[Campylobacter hyoilei]], CIP 70.80, CIP 7080, Campylobacter hyoilei, Campylobacter sp. OH-18-18281-4B, Campylobacter sp. OH-18-7816, DSM 4689, JCM 2529, LMG 6440, LMG 9860, LMG:6440, LMG:9860, NCTC 11366, Vibrio coli, strain RMIT 32A [[Campylobacter hyoilei]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.